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Generative protein design

Biotechnology & Synthetic BiologyUpdated Oct 5, 2026Version v1

Knowledge Timeline Gaps (1)Evidence (149)Community (0)

Evidence

Public papers linked to this topic and used as evidence for gaps, timelines, and knowledge views.

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Showing 121-132 of total 149 evidence records.

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2019OpenAlexSupporting evidence517 citations

DeepGOPlus: improved protein function prediction from sequence

Maxat Kulmanov; Robert Hoehndorf

Jul 24, 2019Bioinformatics

2019CrossrefDirectly related176 citations

What has de novo protein design taught us about protein folding and biophysics?

David Baker

Apr 1, 2019Protein Science

2019OpenAlexSupporting evidence211 citations

Generative models for graph-based protein design

John Ingraham; Vikas Garg; Regina Barzilay; Tommi Jaakkola

Mar 27, 2019DSpace@MIT (Massachusetts Institute of Technology)

2018OpenAlexSupporting evidence2,196 citations

Inverse molecular design using machine learning: Generative models for matter engineering

Benjamín Sánchez-Lengeling; Alán Aspuru‐Guzik

Jul 26, 2018Science

2018OpenAlexSupporting evidence1,159 citations

Deep reinforcement learning for de novo drug design

Mariya Popova; Olexandr Isayev; Alexander Tropsha

Jul 6, 2018Science Advances

2018OpenAlexDirectly related181 citations

Computational Protein Design with Deep Learning Neural Networks

Jingxue Wang; Huali Cao; John Z. H. Zhang; Yifei Qi

Apr 16, 2018Scientific Reports

2017OpenAlexDirectly related74 citations

Rosetta:MSF: a modular framework for multi-state computational protein design

Patrick Löffler; Samuel Schmitz; Enrico Hupfeld; Reinhard Sterner; Rainer Merkl

Jun 12, 2017PLoS Computational Biology

2017OpenAlexDirectly related239 citations

Insights from molecular dynamics simulations for computational protein design

Matthew C. Childers; Valerie Daggett

Jan 1, 2017Molecular Systems Design & Engineering

2016OpenAlexDirectly related42 citations

Protein engineering by highly parallel screening of computationally designed variants

Mark Sun; Moon‐Hyeong Seo; Satra Nim; Carles Corbi‐Verge; Philip M. Kim

Jul 1, 2016Science Advances

2015OpenAlexSupporting evidence584 citations

Protein Structure and Function Prediction Using I‐TASSER

Jianyi Yang; Yang Zhang

Dec 1, 2015Current Protocols in Bioinformatics

2015OpenAlexSupporting evidence1,925 citations

JPred4: a protein secondary structure prediction server

Alexey Drozdetskiy; Christian Cole; James B Procter; Geoffrey John Barton

Apr 16, 2015Nucleic Acids Research

2015OpenAlexSupporting evidence2,689 citations

I-TASSER server: new development for protein structure and function predictions

Jianyi Yang; Yang Zhang

Apr 16, 2015Nucleic Acids Research

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Generative protein design — Research Evidence and Topic Memory | Kritoma