Single-Cell Genomics

Genetics & GenomicsUpdated Aug 18, 2026Version v1

Evidence

Public papers linked to this topic and used as evidence for gaps, timelines, and knowledge views.

16 papers

Showing 1-12 of total 16 evidence records.

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2024OpenAlexDirectly related165 citations

Jongsu Lim; Chanho Park; Minjae Kim; Hyukhee Kim; Junil Kim; Dong-Sung Lee

Mar 5, 2024Experimental & Molecular Medicine

2024OpenAlexSupporting evidence172 citations

A fast, scalable and versatile tool for analysis of single-cell omics data

Kai Zhang; Nathan R. Zemke; Ethan J. Armand; Bing Ren

Jan 8, 2024Nature Methods

2022OpenAlexDirectly related844 citations

Effect of the intratumoral microbiota on spatial and cellular heterogeneity in cancer

Jorge Luis Galeano Niño; Hanrui Wu; Kaitlyn D. LaCourse; Andrew G. Kempchinsky; Alexander Baryiames; Brittany Barber; Neal D. Futran; Jeffrey Houlton; Cassie Sather; Ewa Sicińska; Alison Taylor; Samuel S. Minot; Christopher D. Johnston; Susan Bullman

Nov 16, 2022Nature

2022OpenAlexDirectly related902 citations

An introduction to spatial transcriptomics for biomedical research

Cameron G. Williams; Hyun Jae Lee; Takahiro Asatsuma; Roser Vento‐Tormo; Ashraful Haque

Jun 27, 2022Genome Medicine

2022OpenAlexSupporting evidence1,313 citations

Single‐cell RNA sequencing technologies and applications: A brief overview

Dragomirka Jovic; Xue Liang; Hua Zeng; Lin Lin; Fengping Xu; Yonglun Luo

Mar 1, 2022Clinical and Translational Medicine

2022OpenAlexDirectly related684 citations

Comparison and evaluation of statistical error models for scRNA-seq

Saket Choudhary; Rahul Satija

Jan 18, 2022Genome biology

2021OpenAlexDirectly related1,483 citations

Benchmarking atlas-level data integration in single-cell genomics

Malte D. Luecken; Maren Büttner; Kridsadakorn Chaichoompu; Anna Danese; Marta Interlandi; Martin Mueller; Daniel Strobl; Luke Zappia; Martin Dugas; Maria Colomé‐Tatché; Fabian J. Theis

Dec 23, 2021Nature Methods

2021OpenAlexSupporting evidence16K citations

Integrated analysis of multimodal single-cell data

Yuhan Hao; Stephanie Hao; Erica Andersen‐Nissen; William M. Mauck; Shiwei Zheng; Andrew Butler; Madeline J. Lee; Aaron J. Wilk; Charlotte A. Darby; Michael Zager; Paul Hoffman; Marlon Stoeckius; Efthymia Papalexi; Eleni P. Mimitou; Jaison Jain; Avi Srivastava; Tim Stuart; Lamar M. Fleming; Bertrand Z. Yeung; Angela J. Rogers; M. Juliana McElrath; Catherine A. Blish; Raphaël Gottardo; Peter Smibert; Rahul Satija

May 31, 2021Cell

2021OpenAlexDirectly related492 citations

Single cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidney

Yoshiharu Muto; Parker C. Wilson; Nicolas Ledru; Hao Wu; Henrik Dimke; Sushrut S. Waikar; Benjamin D. Humphreys

Apr 13, 2021Nature Communications

2021OpenAlexDirectly related492 citations

Comprehensive analysis of single cell ATAC-seq data with SnapATAC

Rongxin Fang; Sebastian Preißl; Yang Li; Xiaomeng Hou; Jacinta Lucero; Xinxin Wang; Amir Motamedi; Andrew K. Shiau; Xinzhu Zhou; Fangming Xie; Eran A. Mukamel; Kai Zhang; Yanxiao Zhang; M. Margarita Behrens; Joseph R. Ecker; Bing Ren

Feb 26, 2021Nature Communications

2021OpenAlexSupporting evidence794 citations

SPOTlight: seeded NMF regression to deconvolute spatial transcriptomics spots with single-cell transcriptomes

Marc Elosua-Bayés; Paula Nieto; Elisabetta Mereu; Marta Gut; Holger Heyn

Jan 15, 2021Nucleic Acids Research

2021OpenAlexDirectly related868 citations

scMC learns biological variation through the alignment of multiple single-cell genomics datasets

Lihua Zhang; Qing Nie

Jan 4, 2021Genome biology