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Single-Cell Genomics

Genetics & GenomicsUpdated Oct 5, 2026Version v1

Knowledge Timeline Gaps (1)Evidence (211)Community (0)

Evidence

Public papers linked to this topic and used as evidence for gaps, timelines, and knowledge views.

211 papers

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All211 Core88 Supporting127 Background0

Showing 121-132 of total 211 evidence records.

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2026PubMedDirectly related

High-resolution reconstruction of cell-type-specific transcriptional regulatory processes from bulk sequencing samples.

Yao L; Shah SR; Ozer A; Zhu Y; Pan X; Xia T; Zhang J; Leung AK; Wei M; Lis JT; Yu H

Jan 1, 2026Nature biotechnology

2026PubMedSupporting evidence

Shaoyao decoction inhibits neutrophil migration and restores epithelial integrity in ulcerative colitis model mice: insights from single-cell sequencing.

Cui H; Pei H; Min F; Wang Y; Long Y; Chen X; Chen L; Zhou X; Xing L; Wen W; Li Y; Bian Y; Wang N

Jan 1, 2026Phytomedicine : international journal of phytotherapy and phytopharmacology

2026PubMedDirectly related

ScanNet: Single-cell annotation informed by transcriptional regulation Network via iterative heterogeneous graph learning.

Long Y; Zhang W; Cao L; Huang X; Wang Y

Jan 1, 2026PLoS computational biology

2026PubMedDirectly related

Integrative Multi-Omics Analysis Reveals Convergent Epigenome and Transcriptome Changes in Parkinson's Disease.

Macchi M; Ginolhac A; Heurtaux T; Gomez-Ramos B; Sinkkonen L; Glaab E; NCER‐PD Consortium

Jan 1, 2026Movement disorders : official journal of the Movement Disorder Society

2026PubMedDirectly related

PROFET predicts continuous gene expression dynamics from scRNA-seq data to elucidate heterogeneity of cancer treatment responses.

Cheng YC; Gu H; McDonald TO; Wu W; Tripathi S; Guarducci C; Russo D; Abravanel DL; Bailey M; Wang Y; Zhang Y; Pantazis Y; Levine H; Jeselsohn R; Katsoulakis MA; Michor F

Jan 1, 2026Cell systems

2026PubMedDirectly related

MultiCausGRN: directed prior-guided graph attention model for multi-omics gene regulatory network inference.

Alkhateeb NJ; Awad M

Jan 1, 2026Frontiers in bioinformatics

2026PubMedDirectly related

Robust annotation and discovery of novel cell types in single-cell ATAC-seq data through cross-modal reference alignment.

Cao L; Zhang W; Zhou F; He Y; Long Y; Chen S; Wang Y

Jan 1, 2026Genome research

2026PubMedSupporting evidence

Protocol to identify genes required for cardiomyocyte development using Perturb-Seq.

Sivakumar S; Wang L; Zhao H; Nzima M; Park DC; Wang Y; Sundarrajan A; Takeuchi C; Deng M; Kraus WL; Hon GC; Munshi NV

Jan 1, 2026STAR protocols

2026PubMedSupporting evidence

Ascites reprograms innate lymphoid immune cells in ovarian cancer by promoting ILC2 enrichment and dysfunctional NK-cell states.

Alashkar Alhamwe B; Alhamdan F; Ponath V; Hoffmann N; Meena C; Fingernagel F; Garn H; Pauk K; Keber C; Denkert C; Reinartz S; Pogge von Strandmann E

Jan 1, 2026Journal for immunotherapy of cancer

2026PubMedSupporting evidence

Integrative Epigenomics: Bioinformatics Strategies for Multi-Omics Data Analysis in Health and Disease.

Baruri S; Batra L; Adhikari S; El-Baz A

Jan 1, 2026Epigenomes

2026PubMedSupporting evidence

Stress-driven strategic games in cancer.

Ozcan SC

Jan 1, 2026Bio Systems

2026PubMedSupporting evidence

Multimodal spatial profiling reveals distinct myeloid-defined ENKTL subgroups and tumor-myeloid cooperativity within prognostic inflammatory niche.

Deng L; Liu M; Linton REA; Hu K; Sridhar S; Bertolazzi G; Leong SM; Ding LW; Syn N; Fan S; Myint Wai CM; Li YQ; Bei JX; Xiong J; Zhao WL; Hue SS; Yeong JPS; Chong LY; Poon LM; Ong CK; Lim JQ; Lim ST; Chen J; Xu H; Jeyasekharan AD; Tripodo C; Ng SB

Jan 1, 2026Leukemia

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Single-Cell Genomics — Research Evidence and Topic Memory | Kritoma