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Single-Cell Genomics

Genetics & GenomicsUpdated Oct 5, 2026Version v1

Knowledge Timeline Gaps (1)Evidence (211)Community (0)

Single-Cell Genomics — Research Evidence and Topic Memory | Kritoma

Evidence

Public papers linked to this topic and used as evidence for gaps, timelines, and knowledge views.

211 papers

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All211 Core88 Supporting127 Background0

Showing 145-156 of total 211 evidence records.

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2024CrossrefDirectly related1 citations

CrossMP: Enabling Cross-Modality Translation between Single-Cell RNA-Seq and Single-Cell ATAC-Seq through Web-Based Portal

Zhen Lyu; Sabin Dahal; Shuai Zeng; Juexin Wang; Dong Xu; Trupti Joshi

Jul 5, 2024Genes

2024OpenAlexDirectly related26 citations

Deciphering cell types by integrating scATAC-seq data with genome sequences

Yuansong Zeng; Mai Luo; Ningyuan Shangguan; Peiyu Shi; Junxi Feng; Jin Xu; Ken Chen; Yutong Lu; Weijiang Yu; Yuedong Yang

Apr 10, 2024Nature Computational Science

2024CrossrefDirectly related40 citations

stDiff: a diffusion model for imputing spatial transcriptomics through single-cell transcriptomics

Kongming Li; Jiahao Li; Yuhao Tao; Fei Wang

Mar 27, 2024Briefings in Bioinformatics

2024OpenAlexDirectly related180 citations

Advances in single-cell omics and multiomics for high-resolution molecular profiling

Jongsu Lim; Chanho Park; Minjae Kim; Hyukhee Kim; Junil Kim; Dong-Sung Lee

Mar 5, 2024Experimental & Molecular Medicine

2024OpenAlexDirectly related66 citations

Effective multi-modal clustering method via skip aggregation network for parallel scRNA-seq and scATAC-seq data

Dayu Hu; Ke Liang; Zhibin Dong; Jun Wang; Yawei Zhao; Kunlun He

Jan 22, 2024Briefings in Bioinformatics

2024OpenAlexSupporting evidence185 citations

A fast, scalable and versatile tool for analysis of single-cell omics data

Kai Zhang; Nathan R. Zemke; Ethan J. Armand; Bing Ren

Jan 8, 2024Nature Methods

2023CrossrefDirectly related17 citations

scReadSim: a single-cell RNA-seq and ATAC-seq read simulator

Guanao Yan; Dongyuan Song; Jingyi Jessica Li

Nov 18, 2023Nature Communications

2023CrossrefSupporting evidence7 citations

HArmonized single-cell RNA-seq Cell type Assisted Deconvolution (HASCAD)

Yen-Jung Chiu; Chung-En Ni; Yen-Hua Huang

Oct 31, 2023BMC Medical Genomics

2023CrossrefDirectly related13 citations

scNCL: transferring labels from scRNA-seq to scATAC-seq data with neighborhood contrastive regularization

Xuhua Yan; Ruiqing Zheng; Jinmiao Chen; Min Li

Aug 1, 2023Bioinformatics

2023CrossrefDirectly related37 citations

Exploring PANoptosis in breast cancer based on scRNA-seq and bulk-seq

Puxing He; Yixuan Ma; Yaolu Wu; Qing Zhou; Huan Du

Jun 28, 2023Frontiers in Endocrinology

2023CrossrefDirectly related53 citations

Cellcano: supervised cell type identification for single cell ATAC-seq data

Wenjing Ma; Jiaying Lu; Hao Wu

Apr 3, 2023Nature Communications

2023CrossrefSupporting evidence9 citations

Epi-Impute: Single-Cell RNA-seq Imputation via Integration with Single-Cell ATAC-seq

Mikhail Raevskiy; Vladislav Yanvarev; Sascha Jung; Antonio Del Sol; Yulia A. Medvedeva

Mar 25, 2023International Journal of Molecular Sciences

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