Single-Cell Genomics — Research Evidence and Topic Memory

Evidence

Public papers linked to this topic and used as evidence for gaps, timelines, and knowledge views.

88 papers

Showing 37-48 of total 88 evidence records.

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2026PubMedDirectly related

PROFET predicts continuous gene expression dynamics from scRNA-seq data to elucidate heterogeneity of cancer treatment responses.

Cheng YC; Gu H; McDonald TO; Wu W; Tripathi S; Guarducci C; Russo D; Abravanel DL; Bailey M; Wang Y; Zhang Y; Pantazis Y; Levine H; Jeselsohn R; Katsoulakis MA; Michor F

2026PubMedDirectly related

MultiCausGRN: directed prior-guided graph attention model for multi-omics gene regulatory network inference.

Alkhateeb NJ; Awad M

Jan 1, 2026Frontiers in bioinformatics

2026PubMedDirectly related

Robust annotation and discovery of novel cell types in single-cell ATAC-seq data through cross-modal reference alignment.

Cao L; Zhang W; Zhou F; He Y; Long Y; Chen S; Wang Y

Jan 1, 2026Genome research

2025CrossrefDirectly related0 citations

Histopathological Assessment of Cellular Heterogeneity in Pediatric Ependymomas

Murad Alturkustani

Dec 10, 2025Diagnostics

2025CrossrefDirectly related0 citations

Advances in Explainable Models for Single-cell Transcriptomics and Spatial Transcriptomics Data Analysis

Luchang Ge

Nov 15, 2025Scientific Research Bulletin

2025CrossrefDirectly related3 citations

Single-cell omics arena: evaluation of large language models for automatic cell-type annotations on single-cell omics data via RNA-seq bridging

Junhao Liu; Siwei Xu; Yongxian Wu; Jing Zhang

Nov 1, 2025Briefings in Bioinformatics

2025CrossrefDirectly related0 citations

Structure-guided integrative soft deep clustering analysis of scRNA-seq and scATAC-seq data

Jiang Xingzuo; Wang Chenyuan; Yao Jiaxi; Wang Chengyuan

Sep 17, 2025Frontiers in Microbiology

2025CrossrefDirectly related1 citations

Spatial pattern enhanced cellular and tissue recognition for spatial transcriptomics

Yucen Wang; Zhuoyu Zhang; Guoqiang Li

Jul 4, 2025NAR Genomics and Bioinformatics

2025CrossrefDirectly related4 citations

Fast analysis of Spatial Transcriptomics (FaST): an ultra lightweight and fast pipeline for the analysis of high resolution spatial transcriptomics

Valerio Fulci

Mar 29, 2025NAR Genomics and Bioinformatics

2025CrossrefDirectly related15 citations

scATAC-seq generates more accurate and complete regulatory maps than bulk ATAC-seq

E. Ravza Gur; Jim R. Hughes

Jan 29, 2025Scientific Reports

2024CrossrefDirectly related12 citations

Integrating scRNA-seq and scATAC-seq with inter-type attention heterogeneous graph neural networks

Lingsheng Cai; Xiuli Ma; Jianzhu Ma

Nov 22, 2024Briefings in Bioinformatics

2024CrossrefDirectly related4 citations

scATAcat: cell-type annotation for scATAC-seq data

Aybuge Altay; Martin Vingron

Sep 28, 2024NAR Genomics and Bioinformatics