Single-Cell Genomics — Research Evidence and Topic Memory

Evidence

Public papers linked to this topic and used as evidence for gaps, timelines, and knowledge views.

88 papers

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Showing 73-84 of total 88 evidence records.

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2020CrossrefDirectly related5 citations

Haruka Ozaki; Tetsutaro Hayashi; Mana Umeda; Itoshi Nikaido

Dec 1, 2020BMC Genomics

2020OpenAlexDirectly related222 citations

SpaGE: Spatial Gene Enhancement using scRNA-seq

Tamim Abdelaal; Soufiane Mourragui; Ahmed Mahfouz; Marcel Reinders

Aug 25, 2020Nucleic Acids Research

2019OpenAlexDirectly related576 citations

scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation

Elo Madissoon; Anna Wilbrey-Clark; Ricardo J. Miragaia; Kourosh Saeb‐Parsy; Krishnaa T. Mahbubani; Nikitas Georgakopoulos; Philippa Harding; Krzysztof Polański; Ni Huang; Karol Nowicki-Osuch; Rebecca C. Fitzgerald; Kevin W. Loudon; John R. Ferdinand; Menna R. Clatworthy; A. Tsingene; Stijn van Dongen; M Dąbrowska; Minal Patel; Michael J. T. Stubbington; Sarah A. Teichmann; Oliver Stegle; Kerstin B. Meyer

Dec 31, 2019Genome biology

2019OpenAlexDirectly related5,107 citations

Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression

Christoph Hafemeister; Rahul Satija

Dec 1, 2019Genome biology

2019OpenAlexDirectly related416 citations

Assessment of computational methods for the analysis of single-cell ATAC-seq data

Huidong Chen; Caleb A. Lareau; Tommaso Andreani; Michael Vinyard; Sara P. Garcia; Kendell Clement; Miguel A. Andrade‐Navarro; Jason D. Buenrostro; Luca Pinello

Nov 18, 2019Genome biology

2019OpenAlexDirectly related104 citations

Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps

Camden Jansen; Ricardo N. Ramírez; Nicole El-Ali; David Gómez-Cabrero; Jesper Tegnér; Matthias Merkenschlager; Ana Conesa; A Mortazavi

Nov 4, 2019PLoS Computational Biology

2019OpenAlexDirectly related121 citations

Microfluidic Single‐Cell Omics Analysis

Xing Xu; Junxia Wang; Lingling Wu; Jingjing Guo; Yanling Song; Tian Tian; Wei Wang; Zhi Zhu; Chaoyong Yang

Sep 23, 2019Small

2019OpenAlexDirectly related1,049 citations

Single-cell genomics identifies cell type–specific molecular changes in autism

Dmitry Velmeshev; Lucas Schirmer; Diane Jung; Maximilian Haeussler; Yonatan Perez; Simone Mayer; Aparna Bhaduri; Nitasha Goyal; David H. Rowitch; Arnold R. Kriegstein

May 16, 2019Science

2018OpenAlexDirectly related1,186 citations

Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics

Marlon Stoeckius; Shiwei Zheng; Brian Houck‐Loomis; Stephanie Hao; Bertrand Z. Yeung; William M. Mauck; Peter Smibert; Rahul Satija

Dec 1, 2018Genome biology

2018OpenAlexDirectly related83 citations

Classifying cells with Scasat, a single-cell ATAC-seq analysis tool

Syed Murtuza Baker; Connor Rogerson; Andrew Hayes; Andrew D Sharrocks; Magnus Rattray

Oct 4, 2018Nucleic Acids Research

2018CrossrefDirectly related34 citations

Single-Cell Genomic Analysis in Plants

Yuxuan Yuan; HueyTyng Lee; Haifei Hu; Armin Scheben; David Edwards

Jan 22, 2018Genes

2017OpenAlexDirectly related260 citations

Mapping gene regulatory networks from single-cell omics data

Mark Fiers; Liesbeth Minnoye; Sara Aibar; Carmen Bravo González‐Blas; Zeynep Kalender Atak; Stein Aerts

Dec 26, 2017Briefings in Functional Genomics