Single-Cell Genomics — Research Evidence and Topic Memory

Evidence

Public papers linked to this topic and used as evidence for gaps, timelines, and knowledge views.

211 papers

Showing 181-192 of total 211 evidence records.

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2021OpenAlexDirectly related280 citations

Giovanni Pasquini; Jesús Eduardo Rojo Arias; Patrick Schäfer; Volker Busskamp

Jan 1, 2021Computational and Structural Biotechnology Journal

2020OpenAlexDirectly related345 citations

Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Human Developmental Hematopoiesis

Anna Maria Ranzoni; Andrea Tangherloni; Ivan Berest; Simone G. Riva; Brynelle Myers; Paulina M. Strzelecka; Jiarui Xu; Elisa Panada; Irina Mohorianu; Judith B. Zaugg; Ana Cvejic

Dec 21, 2020Cell stem cell

2020CrossrefDirectly related5 citations

Millefy: visualizing cell-to-cell heterogeneity in read coverage of single-cell RNA sequencing datasets

Haruka Ozaki; Tetsutaro Hayashi; Mana Umeda; Itoshi Nikaido

Dec 1, 2020BMC Genomics

2020OpenAlexSupporting evidence1,805 citations

SoupX removes ambient RNA contamination from droplet-based single-cell RNA sequencing data

Matthew D. Young; Sam Behjati

Dec 1, 2020GigaScience

2020OpenAlexDirectly related222 citations

SpaGE: Spatial Gene Enhancement using scRNA-seq

Tamim Abdelaal; Soufiane Mourragui; Ahmed Mahfouz; Marcel Reinders

Aug 25, 2020Nucleic Acids Research

2020OpenAlexSupporting evidence51 citations

Single-cell ATAC-seq signal extraction and enhancement with SCATE

Zhicheng Ji; Weiqiang Zhou; Wenpin Hou; Hongkai Ji

Jul 3, 2020Genome biology

2020OpenAlexSupporting evidence1,251 citations

A benchmark of batch-effect correction methods for single-cell RNA sequencing data

Hoa Thi Tran; Kok Siong Ang; Marion Chevrier; Xiaomeng Zhang; Nicole Yee Shin Lee; Michelle Goh; Jinmiao Chen

Jan 16, 2020Genome biology

2019OpenAlexDirectly related576 citations

scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation

Elo Madissoon; Anna Wilbrey-Clark; Ricardo J. Miragaia; Kourosh Saeb‐Parsy; Krishnaa T. Mahbubani; Nikitas Georgakopoulos; Philippa Harding; Krzysztof Polański; Ni Huang; Karol Nowicki-Osuch; Rebecca C. Fitzgerald; Kevin W. Loudon; John R. Ferdinand; Menna R. Clatworthy; A. Tsingene; Stijn van Dongen; M Dąbrowska; Minal Patel; Michael J. T. Stubbington; Sarah A. Teichmann; Oliver Stegle; Kerstin B. Meyer

Dec 31, 2019Genome biology

2019OpenAlexDirectly related5,107 citations

Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression

Christoph Hafemeister; Rahul Satija

Dec 1, 2019Genome biology

2019OpenAlexDirectly related416 citations

Assessment of computational methods for the analysis of single-cell ATAC-seq data

Huidong Chen; Caleb A. Lareau; Tommaso Andreani; Michael Vinyard; Sara P. Garcia; Kendell Clement; Miguel A. Andrade‐Navarro; Jason D. Buenrostro; Luca Pinello

Nov 18, 2019Genome biology

2019OpenAlexDirectly related104 citations

Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps

Camden Jansen; Ricardo N. Ramírez; Nicole El-Ali; David Gómez-Cabrero; Jesper Tegnér; Matthias Merkenschlager; Ana Conesa; A Mortazavi

Nov 4, 2019PLoS Computational Biology

2019OpenAlexSupporting evidence254 citations

SCALE method for single-cell ATAC-seq analysis via latent feature extraction

Lei Xiong; Kui Xu; Tian Kang; Yanqiu Shao; Lei Tang; Ge Gao; Michael Zhang; Tao Jiang; Qiangfeng Cliff Zhang

Oct 8, 2019Nature Communications